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whole brain cdna  (TaKaRa)


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    TaKaRa whole brain cdna
    Whole Brain Cdna, supplied by TaKaRa, used in various techniques. Bioz Stars score: 94/100, based on 543 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+brain/Human+Brain%2C+Whole+QUICK-Clone+cDNA/pmc12984142-228-14-17
    Average 94 stars, based on 543 article reviews
    whole brain cdna - by Bioz Stars, 2026-09
    94/100 stars

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    Related Articles

    Gene Expression:

    Article Title: Diagnosis and treatment of cancer using anti-desmoglein-3 antibodies
    Article Snippet: .. TABLE 1 Tissue Source Whole brain Clontech 64020-1 Lung Clinical sample, 1 case Trachea Clontech 64091-1 Heart Ambion 7966 Kidney Ambion 7976 Liver Clinical sample (Surgery) Pancreas Ambion 7954 Stomach Clinical sample (Surgery) Small intestine Ambion 7984 Large intestine Ambion 7986 Bone marrow Clontech 64106-1 Peripheral blood mononuclear cell Clinical sample, 1 case Testis Clontech 64027-1 Prostate Ambion 7988 Ovary Ambion 7974 Skin Stratagene 735031 Lung cancer (adenocarcinoma) Clinical sample, 12 cases Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Liver cancer (moderately differentiated) Clinical sample, 3 cases Liver cancer (well differentiated) Clinical sample, 3 cases Colon cancer Clinical sample, 1 case Colon cancer Clinical sample, 1 case Colon cancer Clinical sample, 1 case Tissues used for DSG3 gene expression analysis TABLE 2 Type of cancer Cell line Medium Serum (%) Brain tumor U251 DMEM 10 Breast cancer MCF7 RPMI1640 10 Esophageal TE2 RPMI1640 10 cancer Stomach cancer AGS RPMI1640 10 GT3 DMEM 10 KatoIII RPMI1640:DMEM = 1:1 10 MKN45 RPMI1640 10 MKN74 RPMI1640 10 2M DMEM 10 2MD3 DMEM 10 Colon cancer CACO2 DMEM 20 DLD1 RPMI1640 10 hCT116 McCoy5A 10 LOVO HamF12:DMEM = 1:1 10 SW480 RPMI1640 10 Liver cancer Alexander DMEM 10 HepG2 DMEM 10 HLE DMEM 10 HuH6 DMEM 10 HuH7 DMEM 10 Pancreatic Capan1 DMEM 20 cancer KLM1 RPMI1640 10 Panc1 RPMI1640 10 Paca2 RPMI1640 10 PK-1 RPMI1640 10 Kidney cancer Caki2 RPMI1640 10 Lung cancer A549 DMEM 10 Lu130 RPMI1640 10 H1359 RPMI1640 10 H157 RPMI1640 10 H1648 HamF12:DMEM = 1:1 10 H2009 HamF12:DMEM = 1:1 10 H23 RPMI1640 10 H2347 RPMI1640 10 H522 RPMI1640 10 Cervical Hela DMEM 10 cancer Cancer cell lines and culturing conditions used for the DSG3 gene expression analysis Search for genes whose expression is enhanced in cancer tissues or cancer cells was performed by setting the mean value of the expression scores for all genes to 100, and comparing the relative expression levels of each gene. ..

    Expressing:

    Article Title: Diagnosis and treatment of cancer using anti-desmoglein-3 antibodies
    Article Snippet: .. TABLE 1 Tissue Source Whole brain Clontech 64020-1 Lung Clinical sample, 1 case Trachea Clontech 64091-1 Heart Ambion 7966 Kidney Ambion 7976 Liver Clinical sample (Surgery) Pancreas Ambion 7954 Stomach Clinical sample (Surgery) Small intestine Ambion 7984 Large intestine Ambion 7986 Bone marrow Clontech 64106-1 Peripheral blood mononuclear cell Clinical sample, 1 case Testis Clontech 64027-1 Prostate Ambion 7988 Ovary Ambion 7974 Skin Stratagene 735031 Lung cancer (adenocarcinoma) Clinical sample, 12 cases Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Lung cancer (squamous cell carcinoma) Clinical sample, 1 case Liver cancer (moderately differentiated) Clinical sample, 3 cases Liver cancer (well differentiated) Clinical sample, 3 cases Colon cancer Clinical sample, 1 case Colon cancer Clinical sample, 1 case Colon cancer Clinical sample, 1 case Tissues used for DSG3 gene expression analysis TABLE 2 Type of cancer Cell line Medium Serum (%) Brain tumor U251 DMEM 10 Breast cancer MCF7 RPMI1640 10 Esophageal TE2 RPMI1640 10 cancer Stomach cancer AGS RPMI1640 10 GT3 DMEM 10 KatoIII RPMI1640:DMEM = 1:1 10 MKN45 RPMI1640 10 MKN74 RPMI1640 10 2M DMEM 10 2MD3 DMEM 10 Colon cancer CACO2 DMEM 20 DLD1 RPMI1640 10 hCT116 McCoy5A 10 LOVO HamF12:DMEM = 1:1 10 SW480 RPMI1640 10 Liver cancer Alexander DMEM 10 HepG2 DMEM 10 HLE DMEM 10 HuH6 DMEM 10 HuH7 DMEM 10 Pancreatic Capan1 DMEM 20 cancer KLM1 RPMI1640 10 Panc1 RPMI1640 10 Paca2 RPMI1640 10 PK-1 RPMI1640 10 Kidney cancer Caki2 RPMI1640 10 Lung cancer A549 DMEM 10 Lu130 RPMI1640 10 H1359 RPMI1640 10 H157 RPMI1640 10 H1648 HamF12:DMEM = 1:1 10 H2009 HamF12:DMEM = 1:1 10 H23 RPMI1640 10 H2347 RPMI1640 10 H522 RPMI1640 10 Cervical Hela DMEM 10 cancer Cancer cell lines and culturing conditions used for the DSG3 gene expression analysis Search for genes whose expression is enhanced in cancer tissues or cancer cells was performed by setting the mean value of the expression scores for all genes to 100, and comparing the relative expression levels of each gene. ..

    Article Title: Calmodulin-sensitive adenylyl cyclases mediate AVP-dependent cAMP production and Cl- secretion by human autosomal dominant polycystic kidney cells.
    Article Snippet: RNA quality was verified using an Agilent Bioanalyzer (Santa Clara, CA). .. RNA from human whole brain (Clontech, Palo Alto, CA) was used as a positive control for AC isoform expression. cDNA was synthesized from total RNA using the Invitrogen SuperScript III first-strand synthesis system for RT-PCR. .. Primers for all AC isoforms (68) were purchased from IDT (Coralville, IA), and PCR was performed using a SmartCycler (Cepheid, Sunnyvale, CA) as previously described (68).

    Article Title: Peptide-based inhibition of the HOXA9/PBX interaction retards the growth of human meningioma.
    Article Snippet: tumors was treated with HXr9.. We also examined the disruption of HOXa9/PBX dimers.. Results We first confirmed that HOXa9 is highly expressed in meningiomas, but not in normal brain tissue. the HXr9 peptide blocks the binding of HOXa9 to PBX, leading to an alteration of Dna binding, and subsequent regulation of their target genes.

    Positive Control:

    Article Title: Calmodulin-sensitive adenylyl cyclases mediate AVP-dependent cAMP production and Cl- secretion by human autosomal dominant polycystic kidney cells.
    Article Snippet: RNA quality was verified using an Agilent Bioanalyzer (Santa Clara, CA). .. RNA from human whole brain (Clontech, Palo Alto, CA) was used as a positive control for AC isoform expression. cDNA was synthesized from total RNA using the Invitrogen SuperScript III first-strand synthesis system for RT-PCR. .. Primers for all AC isoforms (68) were purchased from IDT (Coralville, IA), and PCR was performed using a SmartCycler (Cepheid, Sunnyvale, CA) as previously described (68).

    Article Title: Transcription of GABA A receptor subunits in circulating monocytes and association to emotional brain function in premenstrual dysphoric disorder
    Article Snippet: Real-time qPCRs were performed in a 20 μl reaction mixture containing 5.42 ng cDNA, 1 x TaqMan Fast Advanced Master Mix (Thermo Fisher Scientific), and 1 x Taqman probe and primer for each gene of interest (Thermo Fisher Scientific). .. To test the specificity of the PCR conditions, cDNA from human whole brain (TaKaRa Bio Europe) was used as a positive control. ..

    Article Title: Transcription of GABA A receptor subunits in circulating monocytes and association to emotional brain function in premenstrual dysphoric disorder.
    Article Snippet: Real-time qPCRs were performed in a 20 μl reaction mixture containing 5.42 ng cDNA, 1 x TaqMan Fast Advanced Master Mix (Thermo Fisher Scientific), and 1 x Taqman probe and primer for each gene of interest (Thermo Fisher Scientific). .. To test the specificity of the PCR conditions, cDNA from human whole brain (TaKaRa Bio Europe) was used as a positive control. ..

    Synthesized:

    Article Title: Calmodulin-sensitive adenylyl cyclases mediate AVP-dependent cAMP production and Cl- secretion by human autosomal dominant polycystic kidney cells.
    Article Snippet: RNA quality was verified using an Agilent Bioanalyzer (Santa Clara, CA). .. RNA from human whole brain (Clontech, Palo Alto, CA) was used as a positive control for AC isoform expression. cDNA was synthesized from total RNA using the Invitrogen SuperScript III first-strand synthesis system for RT-PCR. .. Primers for all AC isoforms (68) were purchased from IDT (Coralville, IA), and PCR was performed using a SmartCycler (Cepheid, Sunnyvale, CA) as previously described (68).

    Article Title: Peptide-based inhibition of the HOXA9/PBX interaction retards the growth of human meningioma.
    Article Snippet: tumors was treated with HXr9.. We also examined the disruption of HOXa9/PBX dimers.. Results We first confirmed that HOXa9 is highly expressed in meningiomas, but not in normal brain tissue. the HXr9 peptide blocks the binding of HOXa9 to PBX, leading to an alteration of Dna binding, and subsequent regulation of their target genes.

    Polymerase Chain Reaction:

    Article Title: Alternative Splicing as a Molecular Switch for Ca2+/Calmodulin-Dependent Facilitation of P/Q-Type Ca2+ Channels
    Article Snippet: .. According to previously described methods (Soong et al., 2002), we used PCR to amplify the exons flanking the EF hand from the following eight human cDNA libraries: whole brain (7187-1; Clontech, Palo Alto, CA), fetal brain (7129-1), amygdala (7190- 1), cerebellum (7120-1), cerebral cortex (7110-1), hippocampus (7169- 1), substantia nigra (7193-1), and thalamus (7188-1). ..

    Article Title: Transcription of GABA A receptor subunits in circulating monocytes and association to emotional brain function in premenstrual dysphoric disorder
    Article Snippet: Real-time qPCRs were performed in a 20 μl reaction mixture containing 5.42 ng cDNA, 1 x TaqMan Fast Advanced Master Mix (Thermo Fisher Scientific), and 1 x Taqman probe and primer for each gene of interest (Thermo Fisher Scientific). .. To test the specificity of the PCR conditions, cDNA from human whole brain (TaKaRa Bio Europe) was used as a positive control. ..

    Article Title: Transcription of GABA A receptor subunits in circulating monocytes and association to emotional brain function in premenstrual dysphoric disorder.
    Article Snippet: Real-time qPCRs were performed in a 20 μl reaction mixture containing 5.42 ng cDNA, 1 x TaqMan Fast Advanced Master Mix (Thermo Fisher Scientific), and 1 x Taqman probe and primer for each gene of interest (Thermo Fisher Scientific). .. To test the specificity of the PCR conditions, cDNA from human whole brain (TaKaRa Bio Europe) was used as a positive control. ..

    Article Title: Transcriptional regulation of N-acetylglucosaminyltransferase V by the src oncogene.
    Article Snippet: Bands were detected using the ECL reagents (Amersham Corp.) and quantitated by scanning densitometry. .. 59 RACE Analysis—Marathon Race Ready cDNA from human whole brain (CLONTECH) was used as a template in a 59 RACE PCR according to the manufacturer’s instructions. ..

    cDNA Synthesis:

    Article Title: Peptide-based inhibition of the HOXA9/PBX interaction retards the growth of human meningioma.
    Article Snippet: tumors was treated with HXr9.. We also examined the disruption of HOXa9/PBX dimers.. Results We first confirmed that HOXa9 is highly expressed in meningiomas, but not in normal brain tissue. the HXr9 peptide blocks the binding of HOXa9 to PBX, leading to an alteration of Dna binding, and subsequent regulation of their target genes.

    Quantitation Assay:

    Article Title: Peptide-based inhibition of the HOXA9/PBX interaction retards the growth of human meningioma.
    Article Snippet: tumors was treated with HXr9.. We also examined the disruption of HOXa9/PBX dimers.. Results We first confirmed that HOXa9 is highly expressed in meningiomas, but not in normal brain tissue. the HXr9 peptide blocks the binding of HOXa9 to PBX, leading to an alteration of Dna binding, and subsequent regulation of their target genes.



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    Image Search Results


    Performance of STCS on high-resolution Stereo-seq mouse brain data. A) Tissue images and segmentations. Left: original H&E image; Center: nuclei segmentation mask; Right: Single-cell Segmented slide by STCS (colored by cell class, defined as higher-level groupings of CellTypist-predicted cell types. B) Spatial continuity metrics. Left: Cell-class coherence across neighborhood size. computed as the proportion of spatially nearest neighbors sharing the same cell-class label at each neighborhood size. Higher values indicate greater spatial consistency of cell-class assignments within local tissue contexts. Middle: CHAOS scores computed at the Leiden cluster level. Right: CHAOS scores computed at the cell-class level. Lower CHAOS scores indicate better spatial organization. The center line represents the median CHAOS score and the box spans the interquartile range. The annotated text are µ ± σ . C) Gene Level metrics. Left: Cell-class label-transfer accuracy to a scRNA-seq reference across varying numbers of highly variable genes (HVGs), assessing how reliably reconstructed spatial cells recover reference-defined transcriptional identities and the robustness of predictions based on different selected features. Right: Distribution of gene-expression cosine similarity between reconstructed cells and scRNA-seq reference profiles across cell classes, quantifying transcriptomic agreement. Cosine similarity was computed between each reconstructed cell’s expression profile and the mean expression profile of its assigned cell class in the scRNA-seq reference. Center lines indicate medians and boxes span the interquartile range. The annotated text are µ ± σ . D) Cell-type composition accuracy. Left: Cell-type richness between methods and a single-cell reference data. Right: Absolute error in estimated cellclass proportions compared to the reference. Lower values indicate closer agreement with the cellular composition of the reference data. The annotated text are µ ± σ and center lines indicate median.

    Journal: bioRxiv

    Article Title: STCS: A Platform-Agnostic Framework for Cell-Level Reconstruction in Sequencing-Based Spatial Transcriptomics

    doi: 10.64898/2026.02.26.708370

    Figure Lengend Snippet: Performance of STCS on high-resolution Stereo-seq mouse brain data. A) Tissue images and segmentations. Left: original H&E image; Center: nuclei segmentation mask; Right: Single-cell Segmented slide by STCS (colored by cell class, defined as higher-level groupings of CellTypist-predicted cell types. B) Spatial continuity metrics. Left: Cell-class coherence across neighborhood size. computed as the proportion of spatially nearest neighbors sharing the same cell-class label at each neighborhood size. Higher values indicate greater spatial consistency of cell-class assignments within local tissue contexts. Middle: CHAOS scores computed at the Leiden cluster level. Right: CHAOS scores computed at the cell-class level. Lower CHAOS scores indicate better spatial organization. The center line represents the median CHAOS score and the box spans the interquartile range. The annotated text are µ ± σ . C) Gene Level metrics. Left: Cell-class label-transfer accuracy to a scRNA-seq reference across varying numbers of highly variable genes (HVGs), assessing how reliably reconstructed spatial cells recover reference-defined transcriptional identities and the robustness of predictions based on different selected features. Right: Distribution of gene-expression cosine similarity between reconstructed cells and scRNA-seq reference profiles across cell classes, quantifying transcriptomic agreement. Cosine similarity was computed between each reconstructed cell’s expression profile and the mean expression profile of its assigned cell class in the scRNA-seq reference. Center lines indicate medians and boxes span the interquartile range. The annotated text are µ ± σ . D) Cell-type composition accuracy. Left: Cell-type richness between methods and a single-cell reference data. Right: Absolute error in estimated cellclass proportions compared to the reference. Lower values indicate closer agreement with the cellular composition of the reference data. The annotated text are µ ± σ and center lines indicate median.

    Article Snippet: The Stereo-seq whole mouse brain dataset is available from STOmics ( https://en.stomics.tech/col1241/index.html ).

    Techniques: Single Cell, Gene Expression, Expressing